Detection of intercalation-induced changes in DNA structure by reaction with diethyl pyrocarbonate or potassium permanganate Evidence against the induction of Hoogsteen base pairing by echinomycin

AbstractBinding of the bis-intercalators echinomycin and N,N′-di(9-acridinyl)spermidine or the mono-intercalators 9-aminoacridine and ethidium to DNA induces hypersensitivity of adenines towards reaction with diethyl pyrocarbonate. It is proposed that this hyperreactivity is due to the DNA helix unwinding and extension induced by intercalation, thereby exposing N7 in the major groove, and not as previously suggested to the formation of Hoogsteen base pairing. Hypersensitivity of thymines towards oxidation with permanganate is also induced upon binding of these drugs (especially the bis-intercalators) to DNA. This thymine hyperreactivity is both sequence- and intercalator-dependent, thereby indicating the potential of KMnO4 as a useful probe for analysing the structure of intercalator-DNA complexes in solution

Effects of submerged vegetation on water clarity across climates

A positive feedback between submerged vegetation and water clarity forms the backbone of the alternative state theory in shallow lakes. The water clearing effect of aquatic vegetation may be caused by different physical, chemical, and biological mechanisms and has been studied mainly in temperate lakes. Recent work suggests differences in biotic interactions between (sub)tropical and cooler lakes might result in a less pronounced clearing effect in the (sub)tropics. To assess whether the effect of submerged vegetation changes with climate, we sampled 83 lakes over a gradient ranging from the tundra to the tropics in South America. Judged from a comparison of water clarity inside and outside vegetation beds, the vegetation appeared to have a similar positive effect on the water clarity across all climatic regions studied. However, the local clearing effect of vegetation decreased steeply with the contribution of humic substances to the underwater light attenuation. Looking at turbidity on a whole-lake scale, results were more difficult to interpret. Although lakes with abundant vegetation (>30%) were generally clear, sparsely vegetated lakes differed widely in clarity. Overall, the effect of vegetation on water clarity in our lakes appears to be smaller than that found in various Northern hemisphere studies. This might be explained by differences in fish communities and their relation to vegetation. For instance, unlike in Northern hemisphere studies, we find no clear relation between vegetation coverage and fish abundance or their diet preference. High densities of omnivorous fish and coinciding low grazing pressures on phytoplankton in the (sub)tropics may, furthermore, weaken the effect of vegetation on water clarity

Phase separation of the Potts model in que square lattice

When the two dimensional q-color Potts model in the square lattice is quenched at zero temperature with Glauber dynamics, the energy decreases in time following an Allen-Cahn power law, and the system converges to a phase with energy higher than the ground state energy after an arbitrary large time when q>4. At low but finite temperature, it cesses to obey the power-law regime and orders after a very long time, which increases with q, and before which it performs a domain growth process which tends to be slower as q increases. We briefly present and comment numerical results on the ordering at nonzero temperature.Comment: 3 pages, 1 figure, proceedings of the "International Workshop on Complex sytems", June 2006 in Santander (Spain

Periphyton responses to nitrogen decline and warming in eutrophic shallow lake mesocosms

Periphyton is a key primary producer in shallow lakes, sensitive to global warming and changes in nutrient balances. Reduced nitrogen availability due to accelerated denitrification at higher temperatures or in response to reduced N loadings aimed to reduce the eutrophication may affect periphyton biomass and composition, to compensate for the low N availability (e.g. promoting N2-fixing). We analysed periphyton responses to N decline in 12 eutrophic shallow lake mesocosms during one year of low N compared to high N, under three temperature scenarios: ambient, A2 IPCC scenario and A2 increased by 50%. We used two submerged macrophytes (Potamogeton crispus and Elodea canadensis) and artificial imitations of these as substrates for periphyton growth. Nitrogen decline increased periphyton biomass and induced compositional changes irrespective of season, plant type, and temperature. Periphyton biomass was negatively associated to phytoplankton and positively to plant complexity. Warmer scenarios negatively affected periphyton exclusively at high N loadings. Low N conditions were associated with lower periphyton taxonomic richness, lower N2-fixing cyanobacteria biovolume and increased biovolume of large-sized chlorophytes and non-N2-fixing cyanobacteria. Our results suggest that low N conditions promoted periphyton due to a more efficient use of nutrients and improved light conditions resulting from lower phytoplankton biomass and contrasting effects of temperature. © 2021, The Author(s), under exclusive licence to Springer Nature Switzerland AG.This study was supported by the Sino-Danish Centre – Aarhus University, the University of the Chinese Academy of Sciences and the University of the Republic, Uruguay. E.J. was also supported by the TÜBITAK, BIDEB 2232 program (118C250). C.A. was supported by the Doctoral INPhINIT–INCOMING program, fellowship code (LCF/BQ/DI20/11780004), from “la Caixa” Foundation (ID 100010434). We thank Beibei Hao for her valuable assistance with the experimental design and Ann Lene Vigh and Kathrine Tabermann Uhrenholt for the field and lab assistance

Case study on the efficacy of a lanthanum-enriched clay (Phoslock®) in controlling eutrophication in Lake Het Groene Eiland (The Netherlands)

Lake Het Groene Eiland was created in the beginning of 2008 by construction of dikes for isolating it from the surrounding 220-ha water body. This so-called claustrum of 5 ha was treated using lanthanum-modified clay (Phoslock®) to control eutrophication and mitigate cyanobacterial nuisance. Cyanobacteria chlorophyll-a were significantly lower in the claustrum than those in the reference water body, where a massive bloom developed in summer, 2008. However, PO4-P and TP did not statistically differ in these two waters. TN and NO3-N were significantly lower in the claustrum, where dense submerged macrophytes beds developed. Lanthanum concentrations were elevated after the applications of the modified clay in the claustrum, but filterable lanthanum dropped rapidly below the Dutch standard of 10.1 μg l−1. During winter, dozens of Canada geese resided at the claustrum. Geese droppings contained an average of 2 mg PO4-P g−1 dry weight and 12 mg NH3-N g−1 dry weight and might present a growing source of nutrients to the water. Constructing the claustrum enabled unrestricted bathing in subsequent three summers, as no swimming bans had to be issued due to cyanobacteria blooms. However, the role of the modified clay in this positive outcome remains unclear, and longevity of the measures questionable.

Comparative pharmacology of a new recombinant FSH expressed by a human cell line

Recombinant FSH proteins are important therapeutic agents for the treatment of infertility, including follitropin alfa expressed in Chinese Hamster Ovary (CHO) cells and, more recently, follitropin delta expressed in the human cell line PER.C6. These recombinant FSH proteins have distinct glycosylation, and have distinct pharmacokinetic and pharmacodynamic profiles in women. Comparative experiments demonstrated that follitropin delta and follitropin alfa displayed the same in vitro potency at the human FSH receptor, but varied in their pharmacokinetics in mouse and rat. While follitropin delta clearance from serum depended in part on the hepatic asialoglycoprotein receptor (ASGPR), follitropin alfa clearance was unaffected by ASGPR inhibition in rat or genetic ablation in mice. The distinct properties of follitropin delta and follitropin alfa are likely to contribute to the differing pharmacokinetic and pharmacodynamic profiles observed in women and to influence their efficacy in therapeutic protocols for the treatment of infertility